FastQCFastQC Report
Sun 21 May 2023
EGAF00007935438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478124
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11580.24219658498632152No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8450.1767323957801742No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6210.12988262459111025No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5660.11837933255808117No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5140.10750349281776275No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5110.10687604052505209No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4900.10248387447607733No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4890.10227472371184045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)