FastQCFastQC Report
Sun 21 May 2023
EGAF00007935439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478124
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69011.4433494239987954No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11410.23864102199429435No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10850.22692857919702838No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7310.15288920865716843No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5970.12486300624942484No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5970.12486300624942484No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5720.11963423714350253No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5560.11628782491571224No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5010.10478453288268316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)