FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415902
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56821.3661872267986208No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18400.4424119143452063No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15030.3613832104678506No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11550.27770965275473547No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8610.207019922962621No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7670.18441844472976807No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6750.16229784901250777No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6390.1536419637318407No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6100.14666916725574775No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5640.1356088693971176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4670.11228606739087574No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4460.10723680097715327No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4450.10699635971935698No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4180.10050444575885666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)