FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420395
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60161.4310350979436008No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17840.42436280165082835No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15290.36370556262562587No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11960.28449434460447914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9100.2164630882860167No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7740.18411256080590874No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7120.1693645262193889No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6560.15604372078640327No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6280.14938331806991045No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5770.13725187026486996No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4580.10894515871977546No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4580.10894515871977546No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4350.10347411363122777No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4250.10109539837533747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)