FastQCFastQC Report
Wed 31 May 2023
EGAF00007935445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499455
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29440.5894424923166252No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22500.45049103522839895No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18400.3684015576978907No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14470.2897157902113303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14160.2835090248370724No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13280.26588981990369503No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11680.23385490184300886No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10700.2142335145308386No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9660.1934108177913926No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7880.15777197144887928No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7760.15536935259432783No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7140.14295582184581193No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6270.12553683515031383No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6090.12193290686848665No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5970.11953028801393518No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5710.11432461382907368No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5690.11392417735331511No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5520.11052046730936722No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5250.10511457488662643No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5160.10331261074571284No Hit

[OK]Adapter Content

Adapter graph