FastQCFastQC Report
Wed 31 May 2023
EGAF00007935452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494665
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT26260.5308643223191454No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16940.3424539840093801No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT13140.2656343181749265No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9130.1845693550180425No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG7490.15141560450001515No Hit
AACGTGAGGACGCGGAGTGGACGGGGTCTGCGGCAGCTGACGAC6990.1413077537323239No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG6270.12675244862684848No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA6140.12412440742724876No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5600.11320792859814217No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5440.10997341635248098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)