FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481057
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17660.36710826367769306No Hit
GATACGGTCACAGTTCAGGGTCAGTGGGCAGGTATCTGCCAGTT13900.2889470478550359No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7940.16505320575316437No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7730.16068781869923937No Hit
CGGTGCAACTTTGGCCGTTACGGTCACGTTGCCGGTTTTGGTAA7480.15549092934932868No Hit
TTTGATGCCGGAGTACGCCAGGCCCCAAACTGCATCGGTGTGAC7180.1492546621294358No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6710.13948451015160365No Hit
GTCTACAACGCGGAAAGTCGCATCCGGAGCAATCATTTTAACGT6560.13636637654165723No Hit
AGCAGAGTGACGCTGCGGCAGCGGGTGAACATAGATCAGCGGAC6270.1303379848957608No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6090.12659622456382508No Hit
GTCTGCGGTACCCGGGATGGTGTCGTTAACGTCAGTGTAGGTCA6000.12472534439785722No Hit
TGCCATGCCACGCAGCGCGATGGCCGCAGCAATCTGGTCGTCCT5960.12389384210187152No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5910.12285446423188937No Hit
GTGTTCGGTGCCGATACGTGGGGAAGCGAAGCGCATCGCTTCCG5750.1195284550479465No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5500.11433156569803579No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5050.10497716486819648No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG4920.10227478240624292No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4860.10102752896226436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)