FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481057
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47060.9782624512271935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17600.3658610102337145No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16150.33571905200423235No Hit
GTGGGTCTGATCCCGCGTAACGGCGTTGACC14500.3014195822948216No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12080.2511136933876859No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7990.16609258362314652No Hit
GGTGAACAGTGCTTCAGCGGTGGCATTGACG7830.16276657443920367No Hit
GATGGTAGCCCAGTAGTGGGCACCACTGACA7270.15112554229540365No Hit
GCAGCGTGCCGTGCACTGGGCGAAGCAGGTG6860.14260264376155007No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT6740.14010813687359294No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6540.13595062539366437No Hit
GGTCTGAAAACCTACGCGTGCGAGGTGACTG6410.1332482429317108No Hit
ACCGCAGCTGACGCGGCGGAACAGGATGGCA6330.13158523833973937No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6040.12555684669384296No Hit
CCGCTGGTAACTGATCTGCCGCACTATGTCG5820.1209835840659215No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5530.11495519242002508No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5230.10871892520013221No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4990.10372991142421793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4820.10019602666627864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)