FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525281
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35160.6693560208726377No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19220.3658993948001165No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14960.2847999451722031No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11920.2269261595222367No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8060.15344168169037145No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7880.15001494438214974No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7840.14925344720254494No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7760.14773045284333527No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7580.1443037155351136No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7570.14411334124021238No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7480.14239997258610154No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7180.1366887437390654No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7130.13573687226455933No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6980.13288125784104127No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6630.12621815751949908No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6590.12545666033989428No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6320.12031655437756171No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5920.11270158258151351No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5870.11174971110700749No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)