FastQCFastQC Report
Sun 21 May 2023
EGAF00007935461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500625
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32880.6567790262172284No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21910.4376529338327091No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15450.3086142322097378No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13980.27925093632958803No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12800.2556803995006242No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11080.22132334581772783No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9460.1889637952559301No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9360.18696629213483146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9350.1867665418227216No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8740.17458177278401998No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8330.1663920099875156No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8210.16399500624219726No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8000.15980024968789014No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5940.11865168539325842No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5850.11685393258426967No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5760.11505617977528089No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5520.1102621722846442No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5250.1048689138576779No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5190.10367041198501874No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)