FastQCFastQC Report
Wed 31 May 2023
EGAF00007935462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566793
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21460.37862147203652835No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16610.29305231363125517No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12240.21595185543928735No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11480.2025430801015538No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10820.1908986173082589No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG10460.18454709214827988No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8460.14926084125950742No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7970.1406157097917582No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7900.13938069101065115No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT7630.13461704714066688No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6560.11573890291517361No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6470.11415102162517884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)