FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566793
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22690.4003225163331234No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20700.3652126966987948No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13770.2429458373691983No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13690.24153438733364738No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11690.20624813644487494No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG11560.20395453013710474No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11270.19883802375823273No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9750.17202047308276566No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8760.15455377889282332No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8600.1517308788217215No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8370.14767295996951268No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8290.14626150993396178No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7720.13620492843066165No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7300.12879481574401944No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7020.12385474061959129No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6280.11079882779074547No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5910.10427087137632257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)