FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476793
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46510.9754757305581249No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38380.8049614822365261No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26580.557474627354009No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18870.3957692331892457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18160.38087807497173826No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16990.35633912410626833No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16310.34207716975710634No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16260.34102849664319734No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15630.32781521540794434No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15040.3154408726638185No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13900.2915311256666939No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG13430.28167359839594963No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC13370.28041519065925885No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13350.2799957214136953No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12040.2525204858292802No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11430.23972667383959076No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11260.23616118525230026No Hit
GCCGGTCAGCCGAGCGAACCGTGGCCGGATC11040.2315470235511008No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10980.23028861581441004No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10750.22546471949042873No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC9400.19715054541488652No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9000.18876116050361477No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8920.18708328352136042No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8270.17345053304054378No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7660.16065672105085435No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG7500.15730096708634564No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7280.15268680538514617No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG7160.15016998991176464No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7120.14933105142063746No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6950.14576556283334696No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6640.13926378952711135No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6360.1333912200892211No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6230.13066466999305779No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6050.1268894467829855No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6000.12584077366907653No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5950.12479210055516754No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5830.122275285081786No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5450.11430536941607783No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5360.11241775781104169No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5250.11011067696044197No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5250.11011067696044197No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5250.11011067696044197No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5220.10948147309209656No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5190.10885226922375119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)