FastQCFastQC Report
Wed 31 May 2023
EGAF00007935469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520055
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19890.3824595475478555No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15870.3051600311505514No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12110.23285998596302313No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6990.13440886060128257No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6650.12787109055772947No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5970.1147955504706233No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5550.10671948159329302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)