FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468417
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62001.3236069570489541No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44870.9579071639159125No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40060.8552208822480823No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18950.40455406187222065No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17820.38043025765503813No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA12270.26194608649984946No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA11980.25575502170074954No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT11130.23760879728959455No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10760.22970985254591528No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10240.21860863290614987No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT9690.2068669582871672No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8910.19021512882751906No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC8500.18146224411155018No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8370.17868693920160883No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8370.17868693920160883No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7890.16843965953413303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7600.1622485947350331No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7060.15072040510912285No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7020.14986646513683322No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6630.14154055040700914No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6520.13919221548321262No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5980.12766402585730235No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5930.1265966008919403No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5780.12339432599585412No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5330.11378750130759559No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5320.11357401631452319No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5170.11037174141843699No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5120.10930431645307494No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5120.10930431645307494No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5020.10716946652235082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)