FastQCFastQC Report
Wed 31 May 2023
EGAF00007935473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478971
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47200.9854458829448964No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12850.2682834660136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7970.16639838320065306No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7930.16556325957103873No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5440.11357681362754739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)