FastQCFastQC Report
Sun 21 May 2023
EGAF00007935474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507396
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14480.28537867858635074No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11950.23551624372285157No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11370.2240853298015751No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9940.19590221444394518No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9240.18210628384930114No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9020.1777704199481273No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8990.1771791657797854No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA8260.1627919810167995No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT8210.16180655740289637No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7110.14012723789702716No Hit
CAGGTTGGCCGGGTGCAGCGGGTGCGCCGGGTCGGTCACCGGAT6710.13224384898580202No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6700.1320467642630214No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5260.10366656418261083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)