FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507396
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29250.5764728141333396No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25730.5070989917145582No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13540.26685271464497157No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12260.24162587012905107No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11150.2197494659004013No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG10950.21580777144478866No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA10630.20950106031580856No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9110.17954418245315296No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9070.17875584356203045No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7180.14150683095649158No Hit
GTCCCGGCGTTCTCCCGCGGTCGTTGCTGTA6730.13263801843136327No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5440.10721408919266213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)