FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490967
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21490.43770762597078827No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16020.3262948426268975No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15110.30775999201575666No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14050.2861699462489332No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12730.2592842288789267No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10770.21936301217800788No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10510.2140673405748248No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9300.1894220996523188No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8150.16599893679208583No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7620.1552039139086741No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7610.1550002342316286No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7000.14257577393185286No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6850.1395205787761703No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6840.13931689909912479No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6800.13850218039094278No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6670.13585434458935122No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6490.13218811040253214No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6370.1297439542779861No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5990.12200412655025694No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5830.11874525171752888No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5710.11630109559298282No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5680.1156900565618463No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5630.11467165817661881No Hit
CAGCAGTGCAGAGAAACGGCGACGGGCGCCCAGCGGCGGAGACG5390.1097833459275267No Hit
ACGCGCGTCCAGAGAACCCGCCGGATCGGAGCTAGGACGCGGCG5240.10672815077184412No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5070.10326559626207057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)