FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490967
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47450.9664600675809167No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28470.5798760405485501No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17290.35216216161167657No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16740.3409597793741738No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15550.3167218978057588No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12690.2584695101707447No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11290.22995435538437412No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11180.22771387893687356No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9610.19573616964072943No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9090.1851448264343632No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8390.17088724904117794No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8340.1698688506559504No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8270.16844309291663187No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8220.16742469453140435No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7330.14929720327435447No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7200.14664936747276294No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7130.14522360973344442No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7020.14298313328594386No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7010.14277945360889835No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6630.1350396258811692No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6580.1340212274959417No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6450.13137339169435014No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6260.12750347783048555No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5780.11772685333230136No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5740.11691213462411934No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5720.11650477527002834No Hit
TTCCTGGAAGGCGAAGCAAGCCCGCCGCTGG5710.11630109559298282No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5640.1148753378536643No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5620.1144679784995733No Hit
GTCGCGGGTAAACGTGAAGGTCTGGGCGGTC5500.11202382237502724No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5130.1044876743243436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)