FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551778
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20400.36971390667986037No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17760.3218685775801138No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17520.31751900220740953No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15680.28417225768334364No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13670.24774456393694566No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13290.24085773626349727No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10530.19083761947739852No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10480.18993145794141847No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8990.16292784416921297No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8450.15314129958062844No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8400.1522351380446484No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8400.1522351380446484No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8400.1522351380446484No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7920.14353598729923991No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC7730.14009257346251572No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7100.1286749381091671No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6770.12269427197169876No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6730.12196934274291472No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6260.11345142430470224No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5920.10728952586003791No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5790.10493350586648978No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5740.10402734433050972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)