FastQCFastQC Report
Sun 21 May 2023
EGAF00007935479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551778
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43070.7805675470932151No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39590.7174987041890035No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19420.3519531405746514No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17440.31606914374984146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14490.26260561312701847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14330.25970589621188234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13030.236145696276401No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT11330.2053362040530793No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9220.16709618723472122No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9020.163471541090801No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8850.16039059186846882No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8830.16002812725407684No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG8500.1540474611166085No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8200.1486104919007282No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7220.1308497257955192No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7180.13012479656673517No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6870.12450659504365887No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6280.11381388891909427No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6230.11290772738311422No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5850.10602089970966584No Hit

[OK]Adapter Content

Adapter graph