FastQCFastQC Report
Wed 31 May 2023
EGAF00007935481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530781
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53701.011716696716725No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41100.7743306561463202No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39550.7451284051237704No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18500.34854299607559425No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16440.3097322624585281No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14020.26413907053945035No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12390.233429606560898No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT10800.20347374906034693No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8860.1669238348772846No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8740.16466301544328074No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8460.15938777009727176No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8080.15222850855625955No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG8080.15222850855625955No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7810.14714166482975086No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6880.129620314216221No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6390.12038863486070527No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6230.11737420894870013No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6090.11473658627569562No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5800.1092729393101863No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5780.10889613607118567No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5480.10324408748617603No Hit

[OK]Adapter Content

Adapter graph