FastQCFastQC Report
Sun 21 May 2023
EGAF00007935482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513905
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12060.2346737237427151No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8860.17240540566836282No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7440.144773839522869No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6790.1321255874140162No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6580.12803922904038684No Hit
CATGGTATCGCCAGAGCGCAGTACACGGGAGTTGGCGTTAGTAG5820.11325050349772817No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5440.10585614072639886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)