FastQCFastQC Report
Sun 21 May 2023
EGAF00007935483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513905
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16960.330022085794067No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16770.32632490440840234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12710.2473219758515679No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12540.2440139714538679No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6970.13562818030569854No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6410.12473122464268686No Hit
ATCGAAACCGTCGGTGACATCGTGTCCGGTC5810.11305591500374583No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5620.10935873361808117No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5150.10021307440091066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)