FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517440
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12360.23886827458256032No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8620.16658936301793442No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7560.1461038961038961No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7400.1430117501546073No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5970.1153756957328386No Hit
CATGGTATCGCCAGAGCGCAGTACACGGGAGTTGGCGTTAGTAG5780.11170377241805814No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5670.10957792207792207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)