FastQCFastQC Report
Wed 31 May 2023
EGAF00007935485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517440
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17690.3418753865182437No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16410.3171382189239332No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13300.25703463203463206No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12690.24524582560296848No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6770.13083642547928262No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6370.1231060606060606No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5800.11209029066171923No Hit
ATCGAAACCGTCGGTGACATCGTGTCCGGTC5690.10996444032158317No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5220.1008812615955473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)