FastQCFastQC Report
Sun 21 May 2023
EGAF00007935488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518390
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT26860.5181427110862478No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19620.37847952313894945No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15800.304789830050734No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14660.28279866509770635No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14530.2802909006732383No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14080.27161017766546425No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12540.24190281448330406No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12060.23264337660834508No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11740.2264704180250391No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11620.22415555855629932No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10470.20197148864754336No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9500.18325970794189703No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9340.18017322865024402No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9170.1768938444028627No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT8780.16937055112945854No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8010.15451686953837843No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7970.1537452497154652No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7770.14988715060089894No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7740.149308435733714No Hit
TGCCGGAGCCGCTACTGGGGCCGGCTGCGGAACACCGATATCTG7520.1450645267076911No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7250.1398560929030267No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6180.11921526264009723No Hit
AACGTGAGGACGCGGAGTGGACGGGGTCTGCGGCAGCTGACGAC5950.11477844865834604No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5780.1114990644109647No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5630.10860549007504001No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5440.10494029591620209No Hit
GTCAGACTGCAGCATGGAGTCGTATACCGCATGAACCAGTTGGA5290.1020467215802774No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5220.10069638689017921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)