FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518390
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG27550.5314531530315014No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26320.5077258434769188No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20730.39989197322479214No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16490.31810027199598756No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15580.3005459210247111No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15520.2993884912903413No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14690.2833773799648913No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14140.2727676073998341No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12690.24479638881922874No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12680.24460348386350045No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12600.24306024421767397No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12100.23341499643125832No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11290.217789695017265No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9640.18596037732209342No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9240.1782441790929609No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9170.1768938444028627No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9090.1753506047570362No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8510.16416211732479408No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8510.16416211732479408No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8310.16030401821022783No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7940.15316653484828024No Hit
AACCAGCAGACCAACCAGGCTGGTGGCGAAG7740.149308435733714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7630.14718648122070258No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7280.1404348077702116No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6510.12558112617913153No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6470.12480950635621829No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC6180.11921526264009723No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6110.11786492794999903No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5980.11535716352553096No Hit
CGTTGGAGCCGTTCTCCGTCTGAAGGTCGCG5670.10937710989795328No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5650.10899129998649666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)