FastQCFastQC Report
Sun 21 May 2023
EGAF00007935492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436398
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19480.44638151412242955No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17190.39390647986471067No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14890.34120229698577903No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG13540.3102672331220583No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12810.29353938377352784No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9040.20715035357632253No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8040.18423549145504792No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7220.16544530451560274No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6760.1549044679398164No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6100.13978065893977518No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4930.11297027025788386No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC4670.10701240610635247No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4490.10288773092452302No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4490.10288773092452302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)