FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436398
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43881.0055041498815303No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41040.9404259414571103No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18620.4266747326981334No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16600.38038671121315865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15140.3469310125160977No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13150.3013304368947612No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7400.16956997969743215No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7010.16063318347013508No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6310.14459277998524284No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5940.1361142810003712No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4790.10976218956090542No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATC4750.10884559507605442No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4640.10632496024271423No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4560.10449177127301226No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4500.10311687954573578No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4430.10151283919724655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)