FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405448
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12170.3001617963339318No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9250.22814269647402377No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8500.209644640003157No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7660.18892681675578618No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7310.18029439040271503No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6310.15563031510822595No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5490.13540577336674495No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4960.12233381346066573No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4610.11370138710759456No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4470.1102484165663661No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4430.10926185355458654No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4280.10556224226041318No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4250.1048223200015785No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4130.1018626309662398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)