FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395866
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41511.048587148176403No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6210.15687126451880182No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5780.14600900304648542No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5010.12655797668908167No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4390.11089611131039291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)