FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400033
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12450.31122432399327055No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11110.27772708751527997No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10180.25447900548204777No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8790.21973187212055004No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8790.21973187212055004No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG8600.21498226396322304No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8390.20973269705249317No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8190.20473310951846474No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7730.1932340581901993No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6130.15323735791797177No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6080.15198746103446467No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5820.14548799724022768No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5440.13598878092557365No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5060.1264895646109196No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4990.12473970897400963No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG4960.12398977084390538No Hit
CGGTTTACCTTTACGGGAAGAAGATTGTGCGTGCTTGCGCAGTT4780.11949014206327979No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4490.11224074013893855No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4470.1117407813855357No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4240.10599125572140297No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG4200.1049913382145973No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4190.10474135883789587No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4050.10124164756407596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)