FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400033
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40521.0129164343941626No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23100.5774523601802851No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12560.3139740971369862No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11370.28422655130951696No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10110.2527291498451378No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9400.2349806140993368No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA9050.22623133591478706No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8630.2157322020933273No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8360.2089827589223889No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8310.20773286203888178No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7950.1987336044776306No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6400.15998680108891017No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6160.15398729604807604No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6150.1537373166713746No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5450.13623876030227508No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC4830.12074003894678689No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4770.11924016268657835No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4740.1184902245564741No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4700.1174903070496684No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4680.11699034829626556No Hit
CAGCGTATCCTGCTGGGCTACGAAGATGAGC4640.11599043078945988No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4590.11474053390595276No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4590.11474053390595276No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4440.11099084325543143No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4440.11099084325543143No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4170.10424140008449302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)