FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428978
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36870.8594846355757172No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10530.2454671335126743No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8810.20537183725039512No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8520.19861158381082478No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7690.17926327224239938No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7550.1759997016163999No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7220.168306999426544No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6850.15968184848640257No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5780.13473884441626377No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5470.12751236660155066No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5460.12727925441397928No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5140.11981966441169478No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5050.11772165472355225No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4810.11212696222183888No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4490.10466737221955437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)