FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429316
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15760.36709556597005466No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14700.34240512815734797No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7340.17096963542006355No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7320.17050377810284265No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7200.16770863419951737No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6600.15373291468289094No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5870.13672912260432873No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4860.11320332808467423No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4750.11064111283995938No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4650.10831182625385496No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4560.106215468326361No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4470.10411911039886704No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4370.10178982381276262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)