FastQCFastQC Report
Wed 31 May 2023
EGAF00007935523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429316
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36720.8553140344175385No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11450.2667033141089547No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8660.20171621835664172No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8080.18820635615723616No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7870.1833148543264169No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7730.18005385310587074No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6590.1534999860242805No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6580.15326705736567003No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5840.13603033662849742No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5270.12275340308770229No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5130.11949240186715612No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5120.11925947320854569No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4950.11529968601216818No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4930.1148338286949473No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4790.11157282747440114No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4470.10411911039886704No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA4350.10132396649554175No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4300.10015932320248955No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)