FastQCFastQC Report
Sun 21 May 2023
EGAF00007935566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496078
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18170.3662730457710279No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC15320.3088224029285717No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8770.1767867149924004No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8570.17275509093328065No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8560.17255350973032466No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7430.14977483379629816No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6810.137276799213027No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6510.13122936312434738No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6270.1263914142534037No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6200.12498034583271178No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5870.11832816613516423No Hit
CAGAGTGGTCAGTTCGCGAACACGGCGGGTACCACGTACAATAC5590.11268389245239661No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5300.10683803756667298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)