FastQCFastQC Report
Sun 21 May 2023
EGAF00007935567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496078
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18080.36445881494442406No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC15400.3104350525522196No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13860.27939154729699767No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9820.19795274130277898No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9240.18626103153133175No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8900.1794072706308282No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8830.1779962022101363No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8430.16993295409189682No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8400.16932821048302887No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7840.15803966311749362No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7160.14433214131648653No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6550.13203568793617132No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6260.1261898330504477No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5400.10885384959623284No Hit
CGTAACATGGTGGGCTCTGACGCCAAAGCTA5350.10784594358145291No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5060.10200008869572931No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5020.10119376388390536No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4990.1005890202750374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)