FastQCFastQC Report
Sun 21 May 2023
EGAF00007935568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481198
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17000.3532849263712651No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC15420.32045020968499455No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8890.18474723502591447No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8790.18266908840020118No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8340.1733174285844912No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6860.14256085852393402No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6490.13487171600879472No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6490.13487171600879472No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5890.12240283625451479No Hit
CAGAGTGGTCAGTTCGCGAACACGGCGGGTACCACGTACAATAC5740.1192856163159448No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5430.11284336177623348No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5140.10681673656166484No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5000.10390733128566619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)