FastQCFastQC Report
Sun 21 May 2023
EGAF00007935569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481198
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46250.9611428143924122No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16690.34684267183155376No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC15230.3165017310961392No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12900.2680809147170188No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9510.1976317441053371No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8990.1868253816516278No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8560.17788935116106053No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8170.16978457932077856No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7950.16521265674420926No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6870.14276867318650535No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6830.14193741453622No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6540.13591078932165138No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5810.12074031895394412No Hit
CGTAACATGGTGGGCTCTGACGCCAAAGCTA5350.11118084447566282No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5060.1051542192610942No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5010.10411514594823752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)