FastQCFastQC Report
Wed 31 May 2023
EGAF00007935570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498535
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17450.3500255749345582No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC16060.3221438815730089No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9360.1877501078159006No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8920.17892424804677706No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8780.17611601993841958No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7440.1492372651869979No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7170.14382139669230845No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7130.14301904580420632No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6700.13439377375710834No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6040.12115498410342303No Hit
CAGAGTGGTCAGTTCGCGAACACGGCGGGTACCACGTACAATAC5690.11413441383252931No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5660.11353265066645271No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5330.10691325583961006No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5220.10470679089732916No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5150.10330267684315042No Hit
ACCCTGGTCGGAACGGACCACCTGACGGAAAGAGCGGCGACCGA5060.10149738734492061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)