FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498535
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17300.34701675910417523No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC16150.3239491710712387No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14250.2858375038863871No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10600.2126229853470669No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9650.1935671517546411No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9630.19316597631059004No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8960.17972659893487922No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8740.17531366905031742No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8600.17250544094195996No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7830.15706018634599378No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7500.1504407915191511No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6980.1400102299738233No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5990.12015204549329535No Hit
CGTAACATGGTGGGCTCTGACGCCAAAGCTA5540.11112559800214629No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5470.10972148394796755No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5120.10270091367707383No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5120.10270091367707383No Hit
CGTCGTGAACACGGTGGCCACGACGATGATC4990.10009327329074187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)