FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483348
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16270.3366104752683367No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16000.33102443787912644No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13770.28488790684972315No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT11240.23254466761008633No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10450.21620033598980445No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9940.20564893203240728No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9750.20171801683259266No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9290.19220106424356778No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8760.18123587973882171No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8600.17792563536003045No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8210.16985691468672676No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7740.16013307182402742No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7500.1551677052558405No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6920.1431680693827222No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6900.14275428883537328No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCAC6820.14109916664597763No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6250.12930642104653375No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6220.1286857502255104No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6010.12434105447834687No Hit
TGGGCGGCCGCCACCACGACCGCGACCGCGGCCACGACCAC5890.12185837119425341No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5880.12165148092057895No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5570.1152378824366709No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5290.10944495477378617No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5090.1053071493002971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)