FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483348
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20630.42681463459039864No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17140.3546099290780142No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16990.3515065749728974No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16270.3366104752683367No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11950.24723387704097252No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG11370.23523424116785424No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10460.21640722626347889No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT10250.21206253051631535No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9210.19054594205417213No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8890.18392545329658963No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8710.18020142837044945No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGGGC8490.17564984234961148No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8060.16675356058160995No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7580.15682282744523615No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7070.146271423487839No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7000.14482319157211782No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6530.13509934870941848No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6320.13075465296225494No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGGGT6140.12703062803611476No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6130.1268237377624403No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6060.12537550584671914No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5940.12289282256262568No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5670.11730678517341542No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5540.11461721161564753No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5490.11358276024727525No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCCGC5060.10468647847927373No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGGGT5040.10427269793192483No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4940.10220379519518029No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4910.10158312437415692No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA4880.10096245355313356No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG4870.1007555632794591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)