FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468452
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16540.35307779665792866No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15790.3370676184539718No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13890.2965085003372811No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT11290.24100654923023065No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10190.21752495453109388No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9560.20407640483977013No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9230.19703192643002912No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8790.18763928855037443No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8450.18038134109791398No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8320.17760624354256146No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7750.16543850810755426No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7280.15540546309974126No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCAC6750.14409160383561176No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6650.1419569134084175No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6430.13726059446859015No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6370.1359797802122736No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6100.13021611605884914No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6070.12957570893069087No Hit
TGGGCGGCCGCCACCACGACCGCGACCGCGGCCACGACCAC5640.12039654009375561No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5440.1161271592393671No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5390.11505981402576998No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5240.1118577783849786No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5180.11057696412866205No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5060.10801533561602895No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5030.1073749284878707No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG4750.1013977952917268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)