FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468452
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22470.47966493899054763No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20900.44615029928359795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17440.3722900105026769No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16510.3524373895297704No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16080.3432582206928351No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11590.24741062051181337No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG11300.24122001827295006No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9570.2042898738824896No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9270.19788580260090682No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8450.18038134109791398No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGGGC8210.17525808407264779No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8190.17483114598720895No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7750.16543850810755426No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7710.16458463193667655No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7340.15668627735605783No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7130.15220342745894988No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6760.1443050728783312No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6330.1351259040413959No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5990.12786795658893546No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGGGT5910.12616020424718008No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5750.12274469956366928No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5590.11932919488015847No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5500.11740797349568365No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5390.11505981402576998No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5370.11463287594033114No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGGGT5300.11313859264129515No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG5010.10694799040243184No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCCGC4840.10331901667620161No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4720.10075738816356851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)