FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474617
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16350.34448829266545444No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16280.3430134192411987No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13650.2876003177298748No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT11530.24293272259527154No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10620.2237593680799466No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9350.19700095023987763No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9330.1965795578329474No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8760.18456987423543617No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8530.17972386155573863No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8480.17867038053841308No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8110.170874621010204No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7410.15612588676764633No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7140.15043708927408836No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7000.14748734242557685No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCAC6440.1356883550315307No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6340.1335813929968796No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6320.13316000058994937No Hit
TGGGCGGCCGCCACCACGACCGCGACCGCGGCCACGACCAC6060.12768189929985652No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5980.12599632967213564No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5780.12178240560283345No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5680.11967544356818235No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5320.11209038024343838No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5140.1082978485810664No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5120.1078764561741362No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5020.10576949413948511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)