FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474617
Sequences flagged as poor quality0
Sequence length33
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22190.46753487548907857No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21080.44414759690445144No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17390.36640069782582585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16590.3495450015486171No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16170.34069576100308246No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12000.2528354441581317No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG11510.2425113301883413No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9740.2052181021750169No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9320.19636886162948228No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8980.18920519071166855No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8820.1858340514562268No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8500.17909177294534329No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGGGC8200.17277088684139003No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7880.16602860833050648No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7680.1618146842612043No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6570.1384274056765771No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6450.1358990512349958No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6360.1340027854038098No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGGGT6320.13316000058994937No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6080.12810329170678672No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5880.12388936763748455No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5870.12367867143401944No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5370.11314386126076394No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5340.11251177265036862No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGGGT5330.1123010764469035No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5160.10871924098799664No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4970.10471601312215956No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4960.10450531691869444No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG4950.10429462071522932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)